Cliff,
Leaving stuff brass or painting is really up to you the operator/maintainer of said loco. Work horses often had everything painted even the brass. Easier to slop everything in black paint than mask of brass, paint only iron, then polish said brass.
But with that said many small railroads did cherish their locomotives. Painted them nice colors, clear coated the wood cabs, and polished the brass, and shined the planished iron jackets.
The Joe just feels like one of those beloved little locos. And since it’s for the wife I think pretty should win the day. Keep the brass bits brass. That’s my vote.