You really need a copy of the manual which is 35 pages long. It tells how to adjust synchronization source, exhaust type, start voltage, chuff rate, bell ring rate, air pump type, pop valve, Fireman Fred (love him), grease gun, blower, dynamo, two different lighting effects circuits, whistle control method, bell control method, hiss control method, bell on voltage, bell off voltage, whistle sensitivity (your problem here), and filter rate.
This is why I love the Sierra systems!
The whistle is sensitive to rapid changes in track voltage either intentional (speed up/slow down), or unintentional (dirty track, dead spots [that train coasts through so you don’t really notice], dirty/pulse width power source, etc.)
From the manual:
Setup Step 20 - Filter Rate, The Filter Rate controls Sierras sensitivity to minor track voltage fluctuations due to pulse power, dirty track, etc. A high filter rate will smooth out even the most dramatic voltage changes, but will also slow down Sierras responsiveness to normal throttle changes. A low filter rate on the other hand, increases responsiveness, but may result in the whistle sound being activated inadvertently if the voltage mode is being used (Step 14 selects the voltage or trigger method). Normally you should not have to make an adjustment. If you find that the whistle blows excessively, try increasing the filter rate. If the whistle doesn’t blow at all or you are using a throttle with momentum, try lowering the filter rate. The filter rate setting is indicated by the number of times the F2 LED (the LED closer to terminal 5) blinks and has a range of 1 to 12 with larger numbers corresponding to a lower filter rate. Pressing the Volume (+) button (the button closer to terminal 7) will step through the available settings. Once you have made the adjustment, press and hold the Volume (-) key (closer to terminal 10) for 2 seconds until you hear a short toot. Release the Volume (-) key and proceed to Step 21.
(Step 21 confirms the software version number so at this time Step 20 is complete.)