Yes. I do this in my side tank Porter, with one of the two cell packs in each water tank. Each pair has it’s own PC Board. The battery packs are wired in series and charged as a single 4 cell pack. This is not an ideal situation since during run or charge, one board may cut off before the other. If you never run the loco until it stops (the way you always should with LiIon) and use a programmable charger like you have purchased, the charge should cut off well before the PC board trips as “full”.
Better would be to split up a 4 cell pack and keep the single PCB. That will do a better job of keeping the cells somewhat balanced, but still not perfect. Since you bought the balancing charger, the best wiring would be to include the individual cell leads or the balance charger’s input and then charge with the balancing program. This requires a bit of wiring and a connector that fits the charger.
I am far from the expert here. If Michael Glavin. chimes in again I would take his advice over mine! He has taught me a lot over the years.
EDITED to clarify a few statements and to add this picture of a balance charge in progress on Frankenbattery…